ECOLOG-L Digest - 6 Feb 2003 to 7 Feb 2003 (#2003-38)
Subject: ECOLOG-L Digest - 6 Feb 2003 to 7 Feb 2003 (#2003-38) There are 24 messages totalling 1585 lines in this issue. Topics of the day: 1. Internship: La Selva Biological Station 2. Question about the Shannon Diversity Index (6) 3. Fw: USGS :They're Healthier: With Fewer Parasites, Invaders Gain Competitive Edge Over Native Animals and Plants 4. Faculty Position - Global Change Ecologist - U. Tenn 5. Botanist Position Available 6. Heritage Ranch Institute startup 7. results citations for downstream recovery distances -- long 8. Fisheries journals accepting Web-browser submissions 9. Policy News from ESA's Public Affairs Office (sample) 10. Shannon-Wiener 11. Marine Biology Summer Program Univ. of Oregon 12. field assistant needed 13. Graduate Research Assistantship in Avian Ecology 14. Questions re job search (2) 15. Graduate Research Assistantship in Physiological Ecology 16. position (fwd) 17. Teaching Issues and Experiments in Ecology: 18. Finding a Post doc ---------------------------------------------------------------------- Date: Fri, 7 Feb 2003 11:32:03 -0500 From: David Inouye <inouye@umd.edu> Subject: Internship: La Selva Biological Station Internship at the La Selva Biological Station A research internship is available at the La Selva Biological Station, located in lowland rainforest in Costa Rica, to assist with the development of a mathematical model of the mutualistic interaction between the forest understory plant Piper cenocladum and the ant Pheidole bicornis. Pheidole bicornis live in hollow petioles of the Piper cenocladum plants and defend the plants against herbivorous caterpillars in the genus Eois (family Geometridae). In turn, Piper cenocladum provides P. bicornis with food bodies, which support colony growth. Pheidole ant colonies are also preyed upon by the clerid beetle Tarsobaenus letourneau, which causes trophic cascades leading to elevated caterpillar densities and increased herbivory on Piper cenocladum plants. For more information on the study system see: DYER, L. A., and LETOURNEAU, D. K. 1999a. Relative strengths of top-down and bottom-up forces in a tropical forest community. Oecologia 119:265-274. DYER, L. A., and LETOURNEAU, D. K. 1999b. Trophic cascades in a complex, terrestrial community. Proc. Natl. Acad. Sci. U.S.A. 96:5072-5076. The objective of the mathematical model is to make long-term predictions of the number of plants that acquire ant colonies and the number of herbivores and herbivory rates on plants with and without resident ants. The intern position duties will be divided roughly evenly between assisting with the solution of the model and conducting experiments in La Selva's primary forest reserve to estimate model parameters. Work on a second mathematical model of insect dispersal is also a possibility. The primary skills sought for the position are: 1) knowledge of differential equations (at least an introductory undergraduate course), 2) some knowledge of statistics and 3) an interest in field work. Experience with computer programming, the Maple and/or Matlab mathematical software packages and some facility with Spanish would also be very helpful. The position includes room and board in La Selva's rustic housing and a modest stipend. The position will be available 1 April, 2003. For commitments of six months or more, round trip air fare will be provided. Interested candidates should email a letter of interest and Curriculum Vitae to: Robert Matlock La Selva Scientific Director rmatlock@sloth.ots.ac.cr Closing date is 5 March, 2002 ------------------------------ Date: Thu, 6 Feb 2003 20:12:57 -0500 From: David Casagrande <bighouse@ARCHES.UGA.EDU> Subject: Re: Question about the Shannon Diversity Index Randi- I recommend taking a look at the original equation and explanation, which can be found in: Shannon, C. E. and W. Weaver (1949). The Mathematical Theory of Communication. Urbana, IL, University of Illinois Press. David Casagrande On Thu, 6 Feb 2003, Randi Rotjan wrote: > Hello ecolog-ers, > > Is anyone familiar with the equation for the Shannon Diversity Index? > > I have found 4 sources for the equation, 1 of which specify the equatio > using the natural log (ln), 1 of which specifies the same thing, but > differently, as log base e, 1 which says just "log", and one which uses log > base 2. > > Which is the correct formula? > > Thanks! > > Randi > > > __________________ > Randi Rotjan > Department of Biology > Tufts University > > There is a single light of science, and to brighten it anywhere is to > brighten it everywhere. > --Isaac Asimov > David G. Casagrande http://www.arches.uga.edu/~bighouse Univ. of Georgia Dept. of Anthropology Baldwin Hall Athens, GA 30602-1619 tel: 706-542-3980 fax: 706-542-3998 ------------------------------ Date: Fri, 7 Feb 2003 09:29:27 -0500 From: Karen Claxon <kclaxon@EARTHLINK.NET> Subject: Fw: USGS :They're Healthier: With Fewer Parasites, Invaders Gain Competitive Edge Over Native Animals and Plants ----- Original Message ----- Subject: USGS NEWS RELEASE: They're Healthier: With Fewer Parasites, Invaders Gain Competitive Edge Over Native Animals and Plants USGS News Release |--------------------+------------------------+------------------+------ --------------------| | | | | | | EMBARGOED until 2 | Gloria Maender | 520-670-5596 |Gloria_maender@usgs.gov | | p.m., ET, Feb. 5, | | | | | 2003 | | | | | | Kevin Lafferty | 805-893-8778 |klafferty@lifesci.ucsb.edu| | | | | | | | | | | | | Mark Torchin | 805-893-3998 |torchin@lifesci.ucsb.edu | | | | | | | | | | | | | Andrew Dobson | 609-258-2913 |andy@eno.princeton.edu | |--------------------+------------------------+------------------+------ --------------------| They're Healthier: With Fewer Parasites, Invaders Gain Competitive Edge Over Native Animals and Plants Also available on the Internet at: http://www.usgs.gov/public/press/public_affairs/press_releases/index.htm l News Editors: Reproducible photos are available at: http://www.werc.usgs.gov/news/2003-02-06a.jpg (European green crab with parasitic barnacle. Photo by Todd Huspeni, University of California, Santa Barbara) http://www.werc.usgs.gov/news/2003-02-06b.jpg (European green crab underside showing knob-like parasitic barnacle. Photo by Todd Huspeni, University of California, Santa Barbara) http://www.werc.usgs.gov/news/2003-02-06c.jpg (European green crabs in their natural habitat are smaller than those in invaded habitat. Photo by Jeff Goddard, University of California, Santa Barbara) Invasive species -- second only to habitat destruction in threatening biodiversity -- have far fewer parasites and less illness to contend with than their native competitors, according to two new studies in the Feb. 6 issue of the journal Nature. In super pests such as the European green crab, this escape from parasites means the crab gains an unfair advantage over the competition. "Invasive species end up with about half the parasites, or diseases, they had at home," said Dr. Kevin Lafferty, a USGS marine ecologist at the Western Ecological Research Center in Santa Barbara, Calif. This was among the findings of Lafferty and his colleagues Drs. Mark Torchin and Armand Kuris, and Valerie McKenzie, at the Marine Science Institute at the University of California, Santa Barbara, and Dr. Andrew Dobson at the Department of Ecology and Evolutionary Biology of Princeton University, N.J. "On average, an animal has 16 parasites at home, but brings less than three of these to new areas that it invades," said Torchin, the lead scientist of this study. "In the new region, parasites are not well matched to novel hosts, and only about 4 parasites will successfully attack an invading species." Parasites are so pervasive that parasitism is the most common lifestyle on earth, said Lafferty. And many parasites don't just make animals sick, they may castrate them, change their behavior, even kill them. By leaving parasites behind, introduced species may have an advantage over less fit native competitors, which remain fettered to their own full complement of parasites. In Lafferty's view, "Parasites are to invasive species what kryptonite is to Superman. Back on planet Krypton, kryptonite was a regulator, keeping Superman ordinary. Freed from kryptonite on earth, he gained super powers. But unlike Superman who used his power for good deeds, invasive species can be devastating." The scientists analyzed parasite studies of 26 invasive animal species, from snails to rats, comparing them in natural habitats and invaded habitats. Among them was the European green crab, which Torchin and colleagues traveled the world to study. The scientists found that in Europe, the green crab's native home, parasitic barnacles castrated the crabs. Where the barnacles were common, the crabs were small and rare. Conversely, the scientists found that crabs were big and abundant in areas where barnacles were uncommon. Green crabs have been introduced around the world, to the west and east coasts of the United States, South Africa, Australia, Tasmania and Japan, but barnacles have never made the transfer with them. In these introduced areas, green crabs are often-devastating pests that decimate native shellfish. The same pattern holds true for invasive plants, according to Drs. Charles Mitchell and Alison Power of Cornell University, in a separate study. They found that the introduced plants most likely to become weeds are those that have left behind the most pathogens. Additionally, the two studies documented that the parasites lost by invasive species are also their widespread "Achilles' heel," a weakness that can be intentionally turned against them. According to the scientists, in some cases, bringing in parasites from a pest's native range can hinder super pests. The benefits to this organic form of pest control are sustainability, low cost and reduced dependency on pesticides. But the scientists cautioned that biological control of pests is risky if the parasites are not specific to the target pest. "Suitable biocontrol agents should be harmless to native species just as kryptonite is harmless to earthlings," said Lafferty. The USGS serves the nation by providing reliable scientific information to describe and understand the Earth; minimize loss of life and property from natural disasters; manage water, biological, energy, and mineral resources; and enhance and protect our quality of life. To receive USGS news releases go to www.usgs.gov/public/list_server.html **** www.usgs.gov **** ------------------------------ Date: Fri, 7 Feb 2003 05:36:50 -0500 From: jweltzin@UTK.EDU Subject: Faculty Position - Global Change Ecologist - U. Tenn ASSISTANT OR ASSOCIATE PROFESSOR Global Change Ecology University of Tennessee (UT) The Department of Ecology and Evolutionary Biology intends to hire a faculty member whose research focuses on global change ecology to start on August 1, 2003. The position can be at the Assistant or Associate Professor level. Postdoctoral experience or the equivalent is preferred. The successful candidate will be expected to establish collaborations with the extensive group of Ecologists at UT and Oak Ridge National Laboratory. Teaching will include an introductory course at the freshman or sophomore level and a discipline-specific advanced course. Information about the Department can be found at website: http://eeb.bio.utk.edu/. Interested candidates should send an application to: Dr. Lou Gross, Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 37996. The application should include a resume indicating research goals and teaching experience and goals; the candidate should also arrange for three letters of reference to be submitted. Review of applications will begin on 24 February 2003 and will continue until the position is filled. ------------------------------ Date: Fri, 7 Feb 2003 10:17:54 -0500 From: Erika Iyengar <eiyengar@MAIL.WOOSTER.EDU> Subject: Re: Question about the Shannon Diversity Index Hello! Perfect timing on the Shannon diversity index question--this subject just came up in my aquatic ecology class. I was wondering if anyone knew what the difference is between Shannon-Wiener, Shannon-Weaver, and the Shannon diversity index. Or rather not what the difference is, because often they use exactly the same equation, but why there are different terms for the same thing and which is the correct term to use (it seems many people use them interchangeably). Thank you for any light you can shed on this question. (oh, and just a pronunciation question: is Wiener pronounced "weener" or "winer"?) :-> Erika Iyengar -- Erika V. Iyengar, Ph.D. Visiting Assistant Professor Biology Department, Mateer Hall The College of Wooster Wooster, OH 44691 eiyengar@wooster.edu (330) 263-2437 ------------------------------ Date: Fri, 7 Feb 2003 06:29:22 -0800 From: "Daniel S. Kelly" <dsethkelly@YAHOO.COM> Subject: Botanist Position Available Botanist Needed: Someone with knowledge of woody and herbaceous plants of Appalachian forest needed to quantify impact of white-tailed deer on plant species diversity within multiple study plots in the Blue Ridge and Potomac Basin Region. Must be able to work as part of a survey team, have a valid drivers license, and have practical experience with botanical surveys. Salary range is $1000-1200/month plus housing. Based at Smithsonian^вs Conservation and Research Center in Front Royal, Virginia. Applicants should send cover letter, CV, names and contact information for 3 references, and copies of transcript (if available), to William McShea at wmcshea@crc.si.edu. Starting date in May and will continue for 4-5 months, possibility of continued work. Application materials are due February 28. __________________________________________________ Do you Yahoo!? Yahoo! Mail Plus - Powerful. Affordable. Sign up now. http://mailplus.yahoo.com ------------------------------ Date: Fri, 7 Feb 2003 10:12:55 -0700 From: "William A. Hayes" <dochayes@HRINSTITUTE.ORG> Subject: Heritage Ranch Institute startup We are in the process of developing a research, education, and remediation organization called the Heritage Ranch Institute. We have an advisory board in place and have initiated relationships with public and private organizations including several universities. Our intent is to establish a field station in the foothills of the Black Range in southern New Mexico for biological, ecological, geological, and archaeological research. The field station will be located on working cattle ranches which have permanent conservation easements and a philosophical approach toward maintaining and enhancing biodiversity of native species in the desert southwest. A significant opportunity to conduct research on open space with limited human development will be available. At this time, I am soliciting comments from those who may be interested in using such a field station for research and teaching classes what their specific needs would be (housing, protection for research sites, availability of habitats and organisms, etc.). As we are in the decision making stage on facilities, such input would greatly help us make some important choices. Also, we are interested in building a list of interested individuals to whom announcements on availability of facilities, etc. will be made available periodically. Thank you for any suggestions. Best wishes, Bill William A. Hayes II, Ph.D. Director of Research Heritage Ranch Institute and Professor of Biology Delta State University HC 66 Box 75 Deming NM 88030 505-944-9406 dochayes@hrinstitute.org http://milagro-nm.com/dochayes ------------------------------ Date: Fri, 7 Feb 2003 15:14:10 -0500 From: "Swain, Pat (FWE)" <Pat.Swain@STATE.MA.US> Subject: results citations for downstream recovery distances -- long Thanks to the many of you who responded to my request for citations on up- and downstream distances for recovery from disturbances - or how far upstream from a core area do we need to be concerned about? Several people noted that the original references we knew about weren't in the usual journals for finding such research, and suggested other journals (at the end of the list below). I had missed a list that one of my colleagues here had from more likely places (now added into the list below). There's a lot of reading ahead, but more focussed now. Baier, B, Zintz, K., H. Rahmann 1998. Impacts of a reservoir release on the benthic macroinvertebrate downstream of the impoundment Limnologica 28(4):377-385 Cooper, C.M. 1987. Benthos in Bear Creek, Mississippi: effects of habitat variation and agricultural sediments Journal of Freshwater Ecology: 4(1):101-113 Gore,JA 1982. Benthic invertebrate colonization: source distance effects on community composition. Hydrobiol. 94, 183-193. Gore,JA; Bryant,RM,Jr 1986. Changes in fish and benthic macroinvertebrate assemblages along the impounded Arkansas River. J. Fresh. Ecol. 3, 333-345. Gore,JA; Kelly,JR; Yount,JD 1990. Application of ecological theory to determining recovery potential of disturbed lotic ecosystems: research needs and priorities. Environ. Manag. 14, 755-762. Gore,JA; Milner,AM.. 1990. Island biogeographical theory: Can it be used to predict lotic recovery rates? Environ. Manag. 14, 737-753 Harding J., Benfield E., Bosstad P., Helfman G., Jones E. 1998. Stream biodiversity the ghost of land use past. Ecology 95:14843-14847 Jones III, E.B., Helfman, G.S., Harper, J.O. and P.V. Bolstad. 1999. Effects of riparian forest removal on fish assemblages in southern Appalachian streams Conservation Biology 13(6):1454-1465 King, R.S., K.T. Nunnery, & C.J. Richardson. 2000. Macroinvertebrate assemblage response to highway crossings in forested wetlands: implications for biological assessment. Wetlands Ecology and Management 8:243-256. Kingsford, R.T. 2000. Ecological impacts of dams, water diversion and river management on floodplain wetland in Australia. Austral Ecology 25(2):109-127 Kinsolving, A.D., and M.B. Bain 1993 Fish assemblage recovery along a riverine disturbance gradient Ecological Applications 3(3):531-544 Lytle, D.A. & B. L. Peckarsky. 2001 Spatial and temporal impacts of a diesel fuel spill on stream invertebrates. Freshwater Biology 46:693-704. Margolis, B. E., R. L. Raesly, and D. L. Shumway. 2001. The effects of beaver-created wetlands on the benthic macroinvertebrate assemblages of two small Appalachian streams. Wetlands 21: 554-563. Meade, R. H. 1982. Sources, sinks, and storage of river sediment in the Atlantic drainage of the United States. Journal of Geology 90: 235-252. Munn, M.D. and M.A. Brusven. 1987. Discontinuity of trichopteran (caddisfly) communities in regulated waters of the Clearwater River, Idaho, U.S.A. Regulated Rivers 1:61-69. Nelson, S.M. and R.A. Roline. 1996. Recovery of a stream macroinvertebrate community from mine drainage disturbance. Hydrobiologia 339:73-84. Nelson, S.M. and R.A. Roline. 1999. Relationships between metals and hyporheic invertebrate community structure in a river recovering from metals contamination. Hydrobiologia 397:211-226. Rooke, J.B., and G.L. Mackie 1982. An ecological analysis of lotic environments 1. Design and testing Journal of Freshwater Ecology 1(4):421-432 Stanford, J.A. and J.V. Ward. 2001. Revisiting the serial discontinuity concept. Regulated Rivers: Research and Management vol. 17 pp.303-310 Stanley, E.H., M.A. Luebke, M.W. Doyle, and D.W. Marshall 2002. Short-term changes in channel form and macroinvertebrate communities following low-head dam removal Journal of the North American Benthological Society 21(1):172-187 Vaughn, Caryn C. and Christopher M. Taylor. 1999. Impoundments and the decline of freshwater mussels: a case study of an extinction gradient. Conservation Biology 13:912-920. Vinson, M.R. 2001. Long-term dynamics of an invertebrate assemblage downstream from a large dam Ecological Applications 11(3):711-730 Voelz, N.J. and J.V. Ward. 1990. Macroinvertebrate responses along a complex regulated stream environmental gradient. Regulated Rivers: Research and Management 5:365-374. Voelz, N.J. and J.V. Ward. 1991. Biotic responses along the recovery gradient of a regulated stream. Can. J. Fish. Aquat. Sci. 48:2477-2490. Ward, J. V. and J. A. Stanford. 1983. The serial discontinuity concept of lotic ecosystems In: T.D. Fontaine and S. M. Bartell (eds) Dynamics of lotic ecosystems. Ann Arbor Science, Ann Arbor MI. Williams, G. P. and M. G. Wolman. 1984. Downstream effects of dams on alluvial rivers. U.S. Geological Survey Professional Paper 1286. Peckarsky, Barbara invertebrates drift studie Cushing et al. 1993 Elliot 1971? invertebrates drift studies Minshall et al 1993 Minshall et al., 1983 Newbold et. al. 1981 1983 1992 Sweeney, Bernhard Stroud Water Research Center Thomas et al 2002 Limnology and Oceanography Vannote et al., 1980 Webster et al. 1999 transport and fate of organic matter Freeman, Mary University of Georgia Williams, Lance OSU, clearcutting around stream communities in LA Ecological work Limnology and Oceanography Ecological work Journal of the North American Benthological Society Ecological work Freshwater Biology Ecological work Canadian Journal of Fisheries and Aquatic Science hydrological works Water Resources Research hydrological works Advances in Water Resources hydrological works Hydrological Processes Freeman, Mary University of Georgia Williams, Lance OSU, clearcutting around stream communities in LA From 1960s Longitudinal propagation of impacts in rivers, BOD, Oxygen dynamics Hydrological and engineering literature Water quality sites http://h2osparc.wq.ncsu.edu/brochures/five.html http://www.state.ma.us/dep/brp/dws/files/310cmr22.pdf http://www.co.catawba.nc.us/depts/planning/general/WShed.pdf Pat ------------------------------------------- Patricia Swain Plant Community Ecologist Natural Heritage & Endangered Species Program Massachusetts Division of Fisheries & Wildlife 1 Rabbit Hill Westborough, MA 01581 508-792-7270 ext. 160 fax 508-792-7821 http://www.state.ma.us/dfwele/dfw/nhesp ------------------------------ Date: Fri, 7 Feb 2003 15:27:15 -0500 From: Gus Rassam <grassam@FISHERIES.ORG> Subject: Fisheries journals accepting Web-browser submissions We are happy to announce that all AFS journals are now accepting electronic submissions of new manuscripts via AFS Track, our new Web manuscript tracking system. Journal authors can submit their manuscripts to any of the four AFS journals via their Web browsers. All peer review and editorial communication will be handled electronically, and authors can monitor the progress of their manuscripts through the peer review process. Besides making manuscript submission and peer review more convenient and efficient for authors, editors, and reviewers, AFS Track should substantially reduce time-to-publication for AFS journal articles. You can access links to the individual journal login pages at www.fisheries.org/publications/journals/online_submission.shtml. Or you can go directly to a specific journal. Transactions of the American Fisheries Society (tafs.allentrack.net) North American Journal of Fisheries Management (najfm.allentrack.net) North American Journal of Aquaculture (naja.allentrack.net) Journal of Aquatic Animal Health (jaah.allentrack.net) You will have to register to access the systems, but only at one journal site. Your login and password will work for all four journals. If you have previously completed the Expert Database form at the AFS Web site, you will already have an account on the manuscript tracking system. When you attempt to register, the system will recognize you and will e-mail you a login and password. If you have any difficulty registering or submitting your manuscript, call the Journals Office at 301-897-8616 x227 for assistance. Charles Moseley Journals Manager American Fisheries Society cmoseley@fisheries.org 301-897-8616 x228 ------------------------------ Date: Fri, 7 Feb 2003 14:35:09 -0600 From: Jerrold Zar <t80jhz1@WPO.CSO.NIU.EDU> Subject: Re: Question about the Shannon Diversity Index There is also a discussion of this in Brower, Zar, and Von Ende. 1998. Field and Laboratory Methods for General Ecology, 4th ed., section 5B. Any logarithmic base can be used. Base 10 and base e are commonest in ecology (and base 2 is used in communication engineering, where the diversity measure originated). This publication (as well as Zar. 1999. Biostatistical Analysis, 4th ed., p. 42) gives conversion factors from one base to another. As to nomenclature, C.E. Shannon published the measure in 1948, but not for ecological purposes. Shannon's equation drew some inspiration from N. Wiener and some clarification from W.W. Weaver, but the basic idea appears to have been his. So, I prefer saving space and referring to the "Shannon index." (Th Germanic pronunciation of Wiener would be "weener," but I don't know what Wiener's preference was.) Jerrold H. Zar, Ph.D. Department of Biological Sciences Northern Illinois University DeKalb IL 60115-2854 jhzar@niu.edu ====================================== >>> Dave McNeely <dlmcneely@lunet.edu> 02/06/03 11:14AM >> > Both Krebs (Ecological Methodology, Harper and Row, 1989) and Cox (General Ecology Laboratory Manual, eighth edition, McGraw Hill, 2002) have discussions of the Shannon-Wiener Diversity Index. Briefly, the index has been calculated using natural logs, base 2, and base 10, and values using each of these are in the literature. It is easy to convert one to the other (Cox gives the conversions if your calculator doesn't have them built in). Shannon used base 2, so did Wiener. Base 2 was used in information theory, probably for theoretical reasons in that field. Natural log and log base e are the same thing. Dave McNeely ----- Original Message ----- From: "Randi Rotjan" <randi.rotjan@TUFTS.EDU> To: <ECOLOG-L@LISTSERV.UMD.EDU> Sent: Thursday, February 06, 2003 3:58 PM Subject: Question about the Shannon Diversity Index > Hello ecolog-ers, > > Is anyone familiar with the equation for the Shannon Diversity Index? > > I have found 4 sources for the equation, 1 of which specify the equation > using the natural log (ln), 1 of which specifies the same thing, but > differently, as log base e, 1 which says just "log", and one which uses log > base 2. > > Which is the correct formula? > > Thanks! > > Randi > > > __________________ > Randi Rotjan > Department of Biology > Tufts University > > There is a single light of science, and to brighten it anywhere is to > brighten it everywhere. > --Isaac Asimov ------------------------------ Date: Fri, 7 Feb 2003 17:07:55 -0500 From: David Inouye <inouye@umd.edu> Subject: Policy News from ESA's Public Affairs Office (sample) This is an example of the kind of message that is posted bi-weekly on the ESANEWS listserv list. To subscribe, send the message sub esanews Your Name to listserv@listserv.umd.edu Policy News from ESA's Public Affairs Office (Formerly Science and Environmental Policy Update) A Bi-Weekly Publication of the Ecological Society of America February 7, 2003 In this issue: FOREST FIRES ON THE HILL SUPERFUND APPROPRIATIONS UPDATE AGENCIES' PROPOSED BUDGETS IN BRIEF FOREST FIRES In his State of the Union Address last Tuesday, President Bush called on Congress to pass the 'Healthy Forests' plan. Healthy Forests is the President's plan to reduce catastrophic forest fires through increased thinning on public lands and reduced judicial oversight of fuel reduction projects. In support of the plan, Interior Secretary Gale Norton said President Bush will propose $698.7 million for wildfire prevention and suppression and the Healthy Forests initiative in fiscal 2004, representing a $45 million, or 7 percent, increase over the current year's budget proposal. Some legislators argue that the Bush funding plan is inadequate in the face of the long fire season ahead. Senator Jeff Bingaman (NM), ranking Democrat on the Senate Energy and Natural Resources Committee, said he expected Western lawmakers to press for additional funding. The Administration, on the other hand, argues that proposals to streamline environmental assessments should make those dollars go further. The Bush administration also plans to reduce "hazardous fuel buildup" on 1.3 million acres of forest this year. Additionally, drought has weakened pine forests in the South and West leaving them vulnerable to the bark beetle. The resulting die offs, coupled with a dry winter, have some predicting another dangerous fire season and assure that this issue will remain active in the coming congress. Critics of the Bush plan believe that its approach does not adequately take into account the various forest ecosystems across the country. ON THE HILL Organizational meetings and agenda setting have dominated the schedule of the new congress since it convened on January 7th. In the House, Energy and Commerce Committee Chairman W.J. "Billy" Tauzin (R-LA) said Wednesday that his committee would try again this year to move energy legislation. Tauzin also said that the committee will act on President Bush's call in the State of the Union address for a new $1.2 billion initiative to develop hydrogen-powered cars. In the Senate, Environment and Public Works Committee Chairman James Inhofe (R-OK) said he planned to introduce President Bush's Clear Skies (market based air pollution reduction) initiative in the next few weeks, but added that the president's plan would undergo some changes in committee. The Bush proposal, released in February 2002, would reduce power plant emissions of sulfur dioxide, nitrogen oxides and mercury tonnage by 70 percent from year-2000 levels by 2018. It does not address carbon dioxide emissions. Critics of the plan have focused on the long timeframe for emissions reductions and the grandfathering in of older power plants. Under changes the administration made recently in the Clean Air Act, these older plants may continue to not meet pollution standards, while being allowed to make other upgrades. Inhofe, a longtime critic of the Environmental Protection Agency, said he found that too often regulations are developed prior to a rational. "That's going to come to a halt," Inhofe declared. In addition, Inhofe said he would like to change the longstanding principle in the Clean Air Act that precludes regulators from considering costs when issuing rules. The committee should explore how to add more cost-benefit analysis to the landmark legislation, he added. Democrats cited concerns about "rollbacks" of environmental regulations by the Bush administration and a desire to address global warming. Sen. Inhofe suggested the possibility of "some sort of compromise" on the issue of carbon dioxide emissions. SUPERFUND The Environmental Protection Agency is re-evaluating the cleanup of many superfund sites after new research the agency published in December concluded that trichloroethylene -- or TCE, used to clean electronic components -- is 5 to 65 times as toxic as had been thought. Of the country's 1,499 superfund sites, a third to a half are contaminated with TCE, an EPA official said. APPROPRIATIONS UPDATE On Monday, February 3, 2003, President Bush kicked off the annual budget "ritual" by presenting his budget proposal for the coming fiscal year (2004). This proposal goes to Congress, which has final say over the amount and areas on which government money is spent. The ensuing negotiations will last at least until October, when the new fiscal year begins. Congress is still scrambling to complete work on the current year's budget (FY03). The President's proposed budget for FY04 uses figures from his last budget proposal, not from the actual amount enacted by Congress (since Congress still hasn't finished-they are now aiming to wrap up a giant appropriations bill for FY03 before their next recess, February 14). Many policymakers continue to compare the life sciences with the physical sciences, without distinguishing between the medical and non-medical biological sciences. And while medical biology has received well-deserved increases through the National Institutes of Health, environmental biology and other non-medical aspects of the biological sciences have not. This is one of the key areas on which the Biological Ecological Sciences Coalition (BESC)-co-chaired by the Ecological Society of America-is focusing. The fact that White House officials noted that the President's budget "strengthens the nation's investment in the physical sciences" through significant investments in a number of priority areas, including, for instance, a proposed 13 percent increase for the physical sciences at the National Science Foundation, underscores the need for BESC to continue to work with the Administration and with Congress in getting its message out. AGENCIES' PROPOSED BUDGETS IN BRIEF (More detailed analyses of agencies' budgets will be in future editions of Policy News) DOE The Department of Energy's budget would increase by nearly 6 percent to $23.4 billion in Bush's proposal, with the largest increases devoted to military and civilian nuclear power priorities. DOE's hydrogen technology program would increase by 121 percent, to $88 million. DOE's Office of science programs would increase to $47 million, a 1.4 percent increase. DOE's Biological and Environmental Research (BER) Program would receive $499.5 million; down 9.9 percent from the FY 2002 appropriation; up 3.2 percent from the FY 2003 request. BER's Climate Change Research program would increase by $5.0 million to study the response of ecosystems to environmental change. Funding for the Savannah River Ecology Laboratory would go up by $2.0 million for research on lowering the cost of environmental cleanup activities. DOI Funding for the Department of Interior would go up in the President's budget, from about $10.2 billion to nearly $10.6 billion. However, the budget assumes $2.4 billion in fiscal 2005 revenue from bonus bids for oil and gas leases in the Arctic National Wildlife Refuge. But Congress must approve leasing in the refuge; that highly controversial issue will appear again in upcoming Senate debates over the budget resolution and the energy bill. DOI-USGS Within the DOI, the U.S. Geological Survey would receive a 3 percent increase to $896 million. However, numerous agency programs are once again targeted for cuts in the Administration's proposal, which Congress will likely reinstate. Particularly the agency's water resources programs (Hydrologic Research & Development; Toxic Substances Hydrology) are again proposed to be drastically cut or eliminated altogether (Water Resources Research Act Program). EPA The Bush administration's budget seeks $7.6 billion for the Environmental Protection Agency, an increase of $10 million over the fiscal 2003 request but $452 million below the funding that Congress provided for EPA for fiscal 2002. The Environmental Protection Agency's budget emphasizes Bush's "Clear Skies" initiative, aimed to reduce airborne pollutants from utility plants and factories. In happy contrast to last year's budget proposal, the Administration this year proposes $5 million for the EPA STAR Fellowships. (Last year, this program for graduate students was slated for termination). NOAA The National Oceanic and Atmospheric Administration would receive $2.7 billion, about the same level as the current year. Funding would go up for climate change research and fishery management observers, but would remain flat for Pacific salmon recovery efforts. NSF The National Science Foundation's budget would grow by 9 percent over last year's request. Graduate stipends would increase to $30,000 annually. The Biology Directorate would receive a 7 percent increase, with Environmental Biology slated for a 5 percent increase. In his request, the President once again included $12 million to fund the National Ecological Observatory Network (NEON). The Biology Directorate's portion of the Biocomplexity in the Environment initiative would continue to emphasize the Ecology of Infectious Disease and Microbial Sequencing and would receive a $4 million increase, totaling $39.8 million in FY 04. USDA The U.S. Department of Agriculture's budget would receive a 1.9 percent increase, most of it going to programs required by law, such as the Food Stamp Program and the 2002 Farm Bill. The budget includes increases for firefighting and the Forest Health initiative. The President is requesting $200 million for the National Research Initiative. The budget proposal for the U.S. Forest Service totals $4.06 billion, approximately $109 million above the fiscal 2003 request. Funding for the national forest system would increase by $4 million, to $1.37 billion. Sources: Congressional Green Sheets, The Washington Post. Send questions or comments to Nadine Lymn, ESA Director of Public Affairs, Nadine@esa.org or Maggie Smith, ESA Policy Analyst, Maggie@esa.org If you received Policy News from a friend and would like to receive it directly, please email the command "sub esanews {your first name and last name}" to listserv@listserv.umd.edu If you wish to unsubscribe to the ESANews and your biweekly Policy News, send the command "signoff ESANEWS" to listserv@listserv.umd.edu. Visit the ESA website at: http://www.esa.org/ ------------------------------ Date: Fri, 7 Feb 2003 12:18:09 -0500 From: Gretchen Gettel <gmg7@CORNELL.EDU> Subject: Shannon-Wiener There's an excellent book that discusses many different diversity indices (including H'), how to calculate them, and the merits and drawbacks of each: Magurran, A.E. 1988. Ecological Diversity and Its Measurement. Princeton University Press. The Shannon-Wiener index is called such because it was independently developed by Shannon and Wiener both. I am fairly certain that it is a mistake to call it Shannon-Weaver index, which refers - as Erika points out - to the same equation. The confusion, I believe, stems from the fact that Weaver was a co-author on one of Shannon's papers (but I am not certain of this). The Magurran book cites Krebs 1985 Ecology: The Experimental Analysis of Distribution and Abundance (Harper and Row) for clarification about the name, Shannon-Weaver. -Gretchen ~*~*~*~*~*~*~*~*~*~*~*~*~*~*~*~*~*~*~*~*~*~*~* Gretchen M. Gettel Ph.D. Candidate Program in Biogeochemistry Dept. of Ecology and Evolutionary Biology Corson Hall Cornell University Ithaca, NY 14853 (607) 254-4279 phone (607) 255-8088 fax gmg7@cornell.edu ------------------------------ Date: Fri, 7 Feb 2003 13:24:12 -0500 From: Jan Hodder <jhodder@OIMB.UOREGON.EDU> Subject: Marine Biology Summer Program Univ. of Oregon 2003 SUMMER COURSES AT THE UNIVERSITY OF OREGON'S INSTITUTE OF MARINE BIOLOGY Please pass this information along to undergraduate advisors or students in biology and environmental science who might be interested in spending a summer studying at the Oregon coast. June 23 - Aug 15: INVERTEBRATE ZOOLOGY - Scott Santagata ADAPTATIONS OF MARINE ANIMALS - Charlie Hunter MARINE BIRDS AND MAMMALS - Jan Hodder OCEAN ECOLOGY - Lynda Shapiro July 7 - 17 MARINE BIOLOGY- Peter Fong July 21 - 31 COASTAL FOREST BIOLOGY - TBA June 21 - 22 and June 28 - 29 BIOLOGICAL ILLUSTRATION - Charles Stasek June 24 - 26 DRAWING NATURAL FORMS IN COLOR - Charles Stasek July 12 - 13 and July 19 - 20 MARINE BIOLOGICAL INVASIONS - James Carlton July 26 - 27 and August 2 - 3 COASTAL TROPICAL MARINE CONSERVATION - S.U.K. Ekaratne For more details: www.uoregon.edu/~oimb email: oimb@oimb.uoregon.edu Oregon Institute of Marine Biology University of Oregon PO Box 5389 Charleston, OR 97420 (541) 888-2581 ------------------------------ Date: Fri, 7 Feb 2003 13:58:10 -0500 From: "Schwalm, Donelle \"Doni\"" <dschwalm@ARCHBOLD-STATION.ORG> Subject: field assistant needed This advertisement is a re-posting of a previous listing! =20 FIELD RESEARCH ASSISTANT needed to participate in research at the Avon = Park Air Force Range, in south-central Florida. Field work will = primarily focus on the population dynamics of red-cockaded woodpeckers, = but will also include the opportunity to assist with Florida scrub-jay = and Florida grasshopper sparrow studies. Duties include, but are not = limited to: nest searching and monitoring, identifiying individuals by = accurately reading color bands, climbing trees using sectional ladders, = assisting in trapping and banding adults and nestlings, data entry, GPS = data collection, habitat surveying and conducting maintenance on natural = and artificial cavity trees. The position requires the willingness to = work independently in both longleaf pine and oak scrub habitats, often = in remote areas of a 100,000-acre military reserve. Applicants should = not be color blind or uncomfortable with heights. A keen interest in = birds is the most important prerequisite, but experience in nest = searching, reading color bands, handling and banding birds, familiarity = with the joys of biting insects and working under hot-humid field = conditions will be helpful, though not essential. POSITION BEGINS 3 = MARCH 2003 AND LASTS THROUGH SEPTEMBER 2003 (starting and ending dates = somewhat flexible). Salary is $1200 per month, plus free housing. = Applicants should send a letter of interest and resume (with names, = email addresses, and phone numbers of three references) via snail mail = to Archbold Biological Station Office, Avon Park Air Force Range, 475 = Easy Street, Avon Park, FL 33825 (863-452-4182); or via email to = <mailto:dschwalm@arcbhold-station.org> dschwalm@arcbhold-station.org. E-mail applications preferred (please indicate 'application' in the = subject heading). Position open until filled; early application is = strongly encouraged. =20 Donelle Schwalm Research Assistant III Archbold Biological Station Avon Park Air Force Range Office 475 Easy Street Avon Park, FL 33825 dschwalm@archbold-station.org =20 Not all that is counted counts, and not all that counts is counted.=20 Albert Einstein ------------------------------ Date: Fri, 7 Feb 2003 16:13:49 -0500 From: "Scott R. McWilliams" <srmcwilliams@URI.EDU> Subject: Graduate Research Assistantship in Avian Ecology M.Sc. - Research Assistantship in Avian Ecology Department of Natural Resources Science, University of Rhode Island Project title: Effects of forest management on ruffed grouse and associated wildlife in southern New England forests. A research assistantship is available at the M.Sc. level to study survival, home range size, and daily activity patterns of ruffed grouse in managed forests within southern New England. Radiotelemetry will be used to estimat survival, home range, and daily activity patterns of ruffed grouse. In addition, selected species of songbird that also prefer early successional habitats will be censused to determine how forest management type and histor influences their occurrence. Most field work will be conducted in Rhode Island on public and private forested land. Qualifications: Applicants must have completed an undergraduate degree in animal/wildlife biology or ecology, earned at least a 3.0 GPA, must have taken the GRE, and must have excellent oral and written communication skills Field experience with bird capture and handling, and interest in avian ecology are required. Experience with radiotelemetry and ruffed grouse is highly desirable although not essential. However, experience with quantitative analysis skills and field research is required. Ability to wor collaboratively and to supervise research assistants and undergraduates working in the field is also required. Stipends are approx. $15,000/yr and tuition is paid. Starting date is September 2003. To apply submit the following: a letter stating your qualifications and research interests, a resume, college transcripts, GRE scores, and 3 letters of reference by no later than 28 February 2003 (early application is encouraged) to: Dr. Scott R. McWilliams Dept. Natural Resources Science, University of Rhode Island, Kingston, RI 02881 401-874-7531; srmcwilliams@uri.edu Selected candidates will be asked to apply to the Graduate School of University of Rhode Island. ------------------------------ Date: Fri, 7 Feb 2003 16:26:30 -0500 From: Greg Colores <color1gm@CMICH.EDU> Subject: Re: Questions re job search David (from Boulder at one time?) I just finished up a 4 year postdoc at Montana State University and was able to serve as a co-PI while there. They were also willing to "promote" postodcs to Research Assistant Professor which meant more or less the same thing but gave one the ability to submit grants as a sole PI. Another option is a USDA postdoctoral fellowship if that applies to your field. The remaining amount of my USDA fellowship was transferable to a regular award upon receiving a tenure-track position. They are limited to 90k but can demonstrate the ability to secure funding. I believe NIH has similar programs too. Good luck. Greg Colores ***************************************** Gregory M. Colores Department of Biology 217 Brooks Hall Central Michigan University Mount Pleasant, MI 48859 Office: (989) 774-3412 FAX: (989) 774-3462 E-mail: Greg.Colores@cmich.edu http://www.cst.cmich.edu/users/color1gm ***************************************** On 2/6/03 8:33 PM, "David Bryant" <dmb@IO.HARVARD.EDU> wrote: > Being a job-hunting postdoc myself, I followed this thread closely. I m > curious however about the statement quoted regarding funding. My > institution (and others) do not allow postdocs to apply for funding as > PI's. This is of course a requirement, as I understand it, for "takin it > with you". So if universities do not hire postdocs without current fun ing > how are we to obtain job offers?. > > Any personal experiences along these lines? > > David > > At 12:56 PM 2/6/03 -0800, Laurie Kellogg wrote: >> Hello again, >> >> I suppose I should have been a lot more specific. The jobs that I as well >> as the other people who are interested in the answers to this quest ons) am >> interested in are research university jobs with a greater emphasis n >> research (75%) than on teaching (25%). Here is the statement from web >> site that began all of us discussing it: >> >> One year postdoctorals are useless, they must be 2-3 years to be pr ductive >> Most research Universities will not hire you unless you are bringin in money >> You must have at least 5 primary publications to be competitive >> >> As this was just an opinion website, I wanted to know what others t ought >> about this criteria. >> >> Thanks >> Laurie > > David M. Bryant > Dept of Earth and Planetary Sciences > Harvard University > 20 Oxford St. > Cambridge, MA 02138 > > dmb@io.harvard.edu > > 617-496-6246 ------------------------------ Date: Fri, 7 Feb 2003 16:14:46 -0500 From: "Scott R. McWilliams" <srmcwilliams@URI.EDU> Subject: Graduate Research Assistantship in Physiological Ecology M.Sc. or Ph.D. - Research Assistantship in Physiological Ecology Department of Natural Resources Science, University of Rhode Island Project title: Assessing habitat quality for migrating songbirds using blood metabolites and nondestructive estimates of body composition A research assistantship is available at the M.Sc. or Ph.D. level to study changes in body composition and blood metabolites of representative songbird species as indicators of habitat quality for migrating songbirds while they are using stopover sites in coastal southern New England. The specific objectives and hypotheses of the project include: (1) use TOBEC and deuteriu dilution to estimate body composition changes in free-living, migratory songbirds while they reside in specific habitats, (2) using captive studies, determine the efficacy of using certain blood metabolites as indicators of fat and protein utilization and acquisition in songbirds, (3) test hypothesi that rate of change in body composition is positively related to abundance o certain fruits and insects, (4) test hypothesis that in songbirds certain blood metabolites reliably indicate lipid or protein catabolism whereas othe metabolites indicate lipid deposition, and (5) determine whether (and how) management of these coastal ecosystems can enhance certain habitats that are deemed better quality areas for migrating songbirds. This project is a planned five-year effort (starting 1 September 2003) that will include additional graduate students. Most field work will be conducted at bird-banding stations on Block Island (ca. 15 km off the mainland) and in Kingston, Rhode Island. Captive animal facilities and laboratory equipment for blood analyses are on the University of Rhode Island's main campus in Kingston. Qualifications: Applicants must have completed an undergraduate degree in animal/wildlife biology, physiology, or ecology, earned at least a 3.0 GPA, must have taken the GRE, and must have excellent oral and written communication skills. Field experience with songbird capture and handling, and interest in physiological ecology are required. Experience with analysi of body composition and blood metabolites is highly desirable although not essential. However, experience with quantitative laboratory skills is required. Ability to work collaboratively and to supervise research assistants and undergraduates working in the field and the laboratory is als required. Stipends are approx. $15,000/yr and tuition is paid. Starting date is September 2003. To apply submit the following: a letter stating your qualifications and research interests, a resume, college transcripts, GRE scores, and 3 letters of reference by no later than 28 February 2003 (early application is encouraged) to: Dr. Scott R. McWilliams Dept. Natural Resources Science, University of Rhode Island, Kingston, RI 02881 401-874-7531; srmcwilliams@uri.edu Selected candidates will be asked to apply to the Graduate School of University of Rhode Island. ------------------------------ Date: Fri, 7 Feb 2003 13:01:34 EST From: WirtAtmar@AOL.COM Subject: Re: Question about the Shannon Diversity Index Erika writes: > Hello! Perfect timing on the Shannon diversity index question--this > subject just came up in my aquatic ecology class. I was wondering if > anyone knew what the difference is between Shannon-Wiener, > Shannon-Weaver, and the Shannon diversity index. Or rather not what > the difference is, because often they use exactly the same equation, > but why there are different terms for the same thing and which is the > correct term to use (it seems many people use them interchangeably). There is no difference between the two indices, simply because there is only one index, but it is surrounded by a bit of confusion. A slight priority mus be given to Norbert Wiener simply because Shannon was greatly influenced in his prior definitions and discussions of the relationship of information and entropy, particularly in Wiener's 1948 book, "Cybernetics: or communication and control in the animal and the machine." On page 11 of "Cybernetics", Wiener writes: "The notion of the amount of information attaches itself very naturally to a classical notion in statistical mechanics: that of entropy." Wiener goes on to define that notion, devoting all of Chapter III to its exposition, and explicitly coming to Shannon's definition on Page 62, although as an integral of a continously distributed variable rather than as a discrete set of symbols in the manner that Shannon only very slightly later defined. Shannon recapitulates much of Wiener's argument in his July and October, 194 Bell System Technical Journal papers, beginning at Section 6: "Choice, Uncertainty and Entropy," but for the discrete case. I'm sure that this is s because Shannon was also greatly influenced by John Tukey's then-recent informal (and unpublished) definition of a "binary digit" (a "bit") and quickly deduced that all information (images, sounds, words, etc.), no matte its source, could be represented in terms of discrete samples. Shannon's original papers have been combined into one document and may be downloaded from: http://cm.bell-labs.com/cm/ms/what/shannonday/shannon1948.pdf When Shannon later published this same work in book form in 1949, he had Warren Weaver write an introductory section to the book, explaining the idea in more "layman's terms", in much the same manner than Huxley argued for Darwin's ideas. The full citation for this second publication of the work is "The Mathematical Theory of Communication", Claude E. Shannon & Warren Weaver, 1948, Univ. Illinois Press. Weaver wrote on Page 27 of his introductory statements, "The concept of information developed in this theory seems disappointing and bizarre -- disappointing because it has nothing to do with meaning, and bizarre because it deals not with a single message but rather with the statistical character of a whole ensemble of messages, bizzare also because in these statistical terms the two words information and uncertainty find themselves to be partners." These few words were necessary to a group of engineers and mathematicians wh were far from used to thinking in this manner. Shannon's ultimate inspiratio was Ludwig Boltzmann's populational interpretation of Rudolf Clausius' entropy and not the analog form of radio communication that was common at th time. I suspect much of the confusion regarding the names Shannon-Wiener and Shannon-Weaver results from the similarities of the two names and from the fact that Weaver's name appears on the 1949 book, but calling the index the Shannon-Weaver index is as inappropriate as describing the Darwin-Wallace theory of evolution Darwin-Huxley. For an informal of history of the ideas surrounding Shannon's index, placed in ecological context, let me immodestly recommend a small note of my own that grew out of earlier posting here on ECOLOG-L, following the death of Claude Shannon about this time two years ago: http://aics-research.com/research/esa-shannon.pdf > Thank you for any light you can shed on this question. (oh, and just > a pronunciation question: is Wiener pronounced "weener" or "winer"?) It is my understanding that he pronounced it "Vee-ner." Wirt Atmar ------------------------------ Date: Fri, 7 Feb 2003 13:31:26 -0500 From: Werner Wieland <wwieland@MWC.EDU> Subject: Re: Question about the Shannon Diversity Index I agree in that it does not make any difference which log base is used other than for comparison sake. Even then one can convert from one log base to an ther. There is a problem with comparison to other reported values (don't). As to Shannon, Shannon-Wiener or Shannon-Weaver this is the result of mislab ling which has gotten into the literature (see J.L. Perkins. 1982. Shannon-W aver or Shannon-Wiener? J. Water Ploout. Contr. Fed. 54:1049-1050. Werner Wieland, Chair Voice: (540) 654-1426 Dept. of Biological Sciences FAX: (540) 654-1081 Mary Washington College Email: wwieland@mwc.edu Fredericksburg, VA 22401 >>> Randi Rotjan <randi.rotjan@TUFTS.EDU> 02/06/03 04:58PM > >> Hello ecolog-ers, Is anyone familiar with the equation for the Shannon Diversity Index? I have found 4 sources for the equation, 1 of which specify the equation using the natural log (ln), 1 of which specifies the same thing, but differently, as log base e, 1 which says just "log", and one which uses log base 2. Which is the correct formula? Thanks! Randi __________________ Randi Rotjan Department of Biology Tufts University There is a single light of science, and to brighten it anywhere is to brighten it everywhere. --Isaac Asimov ------------------------------ Date: Fri, 7 Feb 2003 13:09:09 -0500 From: Howard V Cornell <cornell@UDEL.EDU> Subject: position (fwd) P. S. to the below. To speed things up we are encouraging applicants to email their particulars and to have their references email their letters to ramonaw@udel.edu. Thanks, Howard Hello all, We have a temporary faculty position opening in the fall. The hire would be required to teach 2 sections of introductory biology and 1 section of general ecology in the fall, and 2 sections of ecology laboratory and 1 section of introductory biology in the spring. We expect this position to be converted to a permanent full-time non-tenure track position after next year. We have a small (Cornell, Karlson, Tallamy, McDonald) but active research group in ecology and evolution with whom the new hire could interact. Interested parties should send a letter of application, CV and have 3 letters of reference sent to Dr. David Usher, Department of Biological Sciences, University of Delaware, Newark, DE 19716. We will begin screening applicants soon, and all materials should be in our hands by March 1. ********************** Howard V. Cornell Department of Biological Sciences University of Delaware Newark, DE 19716 USA Phone: 302-831-2669 FAX: 302-831-2281 ********************** ------------------------------ Date: Fri, 7 Feb 2003 10:05:49 -0800 From: David Kirschtel <dk01@WASHINGTON.EDU> Subject: Re: Question about the Shannon Diversity Index David Casagrande wrote: > Randi- > I recommend taking a look at the original equation and explanation, wh ch > can be found in: > > Shannon, C. E. and W. Weaver (1949). The Mathematical Theory of > Communication. Urbana, IL, University of Illinois Press. Shannon didn't seem to state a preference for a base, indicating that it was dependent upon that nature and use of the data. He never explicitly indicates a base in the printed equations, but does "bits" as the units for H in the figures (see below - I've modified the math notation slightly to fit a text-only format). A (corrected) reprint of the original 1948 paper is available at from Bell Labs at: http://cm.bell-labs.com/cm/ms/what/shannonday/paper.html ========= [Page 1] The choice of a logarithmic base corresponds to the choice of a unit for measuring information. If the base 2 is used the resulting units may be called binary digits, or more briefly bits, a word suggested by J. W. Tukey. A device with two stable positions, such as a relay or a flip- flop circuit, can store one bit of information. N such devices can store N bits, since the total number of possible states is 2N and log(2)2N=N. If the base 10 is used the units may be called decimal digits. Since log(2)M = log(10)M/log(10)2 = 3.32log(10)M; a decimal digit is about 3 1/3 bits. A digit wheel on a desk computing machine has ten stable positions and therefore has a storage capacity of one decimal digit. In analytical work where integration and differentiation are involved the base e is sometimes useful. The resulting units of information will be called natural units. Change from the base a to base b merely requires multiplication by log(b)a. [Page 11] Theorem 2: The only H satisfying the three above assumptions is of the form: H = -K SUM(i=1, N) {p(i) log p(i)} where K is a positive constant. C. E. Shannon. A Mathematical Theory of Communication. The Bell System Technical Journal, Vol. 27, pp. 379^ж423, 623^ж656, July, October, 1948. ================================================================== David Kirschtel,Ph.D. * dk01@u.washington.edu * 206.543.1844 Biology Program, 318 Hitchcock Hall, Box 355320 Univ. of Washington, Seattle, WA 98195-5320 ------------------------------ Date: Fri, 7 Feb 2003 17:24:09 -0600 From: Jerome Joseph Howard <JJHoward@UNO.EDU> Subject: Re: Questions re job search I'm currently on a search committee at a smaller, but still research oriented university. It is important to realize that each university has a nique approach to hiring that range from the pragmatic to the dysfunctional. One comment: one year postdocs can be quite useful, but it depends on what ou're able to make of it. They are often over so soon that a major publicat on simply can't be a practical goal. In general, the longer the postdoc the longer you have as an investigator to get into the study system and make som thing of it. However, no matter how long a postdoc is, it is entirely usele s if you don't demonstrate that you are doing something more than sorting so eone else's leaf litter. Longer postdocs are better for you as a scientist, but also generate rising expectations that you'll get one or more major firs -authored papers out of it. The landscape is littered with the ruined caree s of people who were successful at generating postdoctoral fundin! g but didn't make enough of their opportunities. Another comment: There are many ways to demonstrate your ability to enerate funding. Smart search committees know this and look for such eviden e. Competitive postdocs (rather than grant-funded ones) are an excellent de onstration of ability. A string of small grants, and testimonials from refe ences who can convince the search committee that your input was critical to he success of a big grant, can also be important. Most universities in fact do not permit postdocs to be PIs because they want the funding to stay when he postdoc goes. Go figure. And beware: any university that demands lots o independent funding as a condition of hire is also likely to demand big dol ars as a condition of tenure, and publications be damned. Make your bed and lie in it. Finally, and very importantly, there is simply NO single formula of xperience, publications, or funding that guarantees success. The bit about publications is entirely the opinion of the person who posted to that web s te, and should not be taken seriously. What impresses a search committee is some combination of publications, funding and experience that fits the appli ant for a particular job at a particular university. A first-authored publi ation in Ecology, along with second authorships on papers in Am Nat and Oeco ogia, will sometimes, but not always, trump 15 first-authored publications i lesser journals. It depends on the publications and on the job. Rather than worry about the length of time you stay a postdoc, worry about doing things that you value while you are a postdoc. Make the best ca e you can for your fitness for a job when you apply, and don't get discourag d or take it personally if you are not interviewed. If time goes by with no success on the job market, as it will for many of you, you'll have to period cally decide whether it's worth it to you to keep it up or to broaden your s arch for employment to include other types of institutions or non-academic j bs. Good people get good jobs, but good jobs are often found in surprising laces. Good luck and best wishes, Jerry Howard Associate Professor Department of Biological Sciences University of New Orleans New Orleans, LA 70148 jjhoward@uno.edu (504) 280-5441 (voice) (594) 280-6121 (fax) Original Message----- From: Laurie Kellogg [mailto:lkellogg@ND.EDU] Sent: Thursday, February 06, 2003 2:56 PM To: ECOLOG-L@LISTSERV.UMD.EDU Subject: Questions re job search Hello again, I suppose I should have been a lot more specific. The jobs that I (as well as the other people who are interested in the answers to this questions) am interested in are research university jobs with a greater emphasis on research (75%) than on teaching (25%). Here is the statement from a web site that began all of us discussing it: One year postdoctorals are useless, they must be 2-3 years to be productive Most research Universities will not hire you unless you are bringing in mone You must have at least 5 primary publications to be competitive As this was just an opinion website, I wanted to know what others thought about this criteria. Thanks Laurie ------------------------------ Date: Fri, 7 Feb 2003 19:01:28 -0500 From: David Inouye <inouye@umd.edu> Subject: Teaching Issues and Experiments in Ecology: 9. Teaching Issues and Experiments in Ecology: Experiments [.pdf] http://www.ecoed.net/tiee/exps/experiments.shtml Teaching Issues and Experiments in Ecology (TIEE) is a collection of peer- reviewed, classroom/ field-tested teaching materials sponsored by the Ecological Society of America. Among these "scientifically sound and pedagogically innovative" teaching materials are a number of particularly well-designed ecology labs for field and classroom. As of February 2003, two of the seven labs on the Web site are complete and ready to download: Ecology of Habitat Contrasts and Environmental Correlates of Leaf Stomata Density. Both are designed for college level courses. Five other labs covering a range of ecology topics will eventually be available, and users may also take advantage of an earlier set of labs from 1993. The resources and materials provided for each lab are incredibly comprehensive. Suffice to say, this Web site is definitely one to bookmark and check frequently for updates. [RS] 13. Fast Plants [.pdf] http://www.fastplants.org/home_flash.asp "To know a plant, grow a plant" is the motto of the Wisconsin Fast Plant Program, a science education outreach program from the University of Wisconsin-Madison. Fast Plants are members of the mustard family bred specifically for use in the classroom -- small, easy to grow, affordable, and with an incredibly short life cycle of about 35-45 days. While the classroom activities provided in this Web site call for Fast Plants seed (available through Carolina Biological Supply), they offer excellent ideas for plant biology projects with or without these special strains. In addition to these downloadable classroom activities, this Web site contains a detailed virtual tour of a plant life cycle, ideas for science fair projects, and other plant-related learning resources. [RS] >From The NSDL Scout Report for the Life Sciences, Copyright Internet Sc ut Project 1994-2002. http://scout.wisc.edu/ ------------------------------ Date: Fri, 7 Feb 2003 18:35:29 -0500 From: Rob Smith <Robert.J.Smith@USM.EDU> Subject: Finding a Post doc Hello, I'll soon have my degree (emphasis in avian migration ecology) and am in the job/post doc market. I was wondering if anyone could provide insight into finding post doc opportunities? I'm monitoring Science, the Chronicle and of course this listserve - are there other places out there to look? Thanks Rob Smith Department of Biological Sciences University of Southern Mississippi Hattiesburg, MS 39406-5018 (601) 266-4394 ------------------------------ Subject: ECOLOG-L Digest - 5 Feb 2003 to 6 Feb 2003 (#2003-37) There are 11 messages totalling 402 lines in this issue. Topics of the day: 1. raster Fragstats v2 for Mac 2. open top chambers and FACE 3. Questions re job search (2) 4. SUMMER AVIAN AND PLANT RESEARCH ASSISTANT POSITIONS 5. Research Internships--Archbold Biological Station 6. Question about the Shannon Diversity Index (2) 7. position 8. postdoc opening: quantitative/theoretical host-pathogen studies 9. Help on Randomization Methods ---------------------------------------------------------------------- Date: Wed, 5 Feb 2003 21:23:32 -0500 From: "Meretsky, Vicky J." <meretsky@INDIANA.EDU> Subject: raster Fragstats v2 for Mac Posted on behalf of the signer. __________________________________ My apologies to anyone not interested in this email. I have ported fragstats (version 2) to run on Mac OS X. I only ported the raster version, as the vector version requires Arc/info, which does not run on mac OS X. I have not done exhaustive testing on it, but it seems to work so far. it is available at: http://www.cs.indiana.edu/~rnajlis/Programming/fragstatsMacOSX.html Thank you. Robert Najlis ------------------------------ Date: Thu, 6 Feb 2003 09:10:34 -0500 From: Qing-Lai Dang <qdang@MAIL1.LAKEHEADU.CA> Subject: open top chambers and FACE Hi there, We are looking for suppliers for Open Top Chambers and FACE facilities. Any information will be greatly appreciated! Thanks. Dr. Qing Lai Dang Associate Professor Faculty of Forestry and the Forest Environment Lakehead University 955 Oliver Road, Thunder Bay Ontario, Canada P7B 5E1 Telephone: (807) 343-8238 Fax: (807) 343-8116 Web: http://giant.lakeheadu.ca/~qdang/ ------------------------------ Date: Thu, 6 Feb 2003 12:56:06 -0800 From: Laurie Kellogg <lkellogg@ND.EDU> Subject: Questions re job search Hello again, I suppose I should have been a lot more specific. The jobs that I (as well as the other people who are interested in the answers to this questions) am interested in are research university jobs with a greater emphasis on research (75%) than on teaching (25%). Here is the statement from a web site that began all of us discussing it: One year postdoctorals are useless, they must be 2-3 years to be productive Most research Universities will not hire you unless you are bringing in mone You must have at least 5 primary publications to be competitive As this was just an opinion website, I wanted to know what others thought about this criteria. Thanks Laurie ------------------------------ Date: Thu, 6 Feb 2003 13:31:17 -0700 From: Steve Hanser <shanser@USGS.GOV> Subject: SUMMER AVIAN AND PLANT RESEARCH ASSISTANT POSITIONS SUMMER AVIAN AND PLANT RESEARCH ASSISTANT POSITIONS: Four to eight seasonal positions are available for part or all of the field season from May through September 2003 to assess bird abundance and vegetation types along Breeding Bird Surveys in the Columbia and Great Basin Ecosystems. The home base for this study is in Boise, ID, but the study site covers Washington, Oregon, Idaho, Nevada, Utah, California, and Arizona. We are looking for assistants who have attention to details, the ability to manage multiple tasks, and can work independently and as a team member. Assistants need to be able to work irregular hours and hot environmental conditions and be willing to camp when in the field. Duties for Avian Research Assistants include collecting avian abundance (point count and BBS surveys), vegetation data, and data management. Applicants must have experience to identify western bird species by sight and sound and some knowledge in plant identification. Duties for Plant Research Assistants include collecting vegetation data and data management. Background in plant identification and basic GIS knowledge preferred but not a must. Applications for these positions will be accepted Feb 10 -13 through Idaho Job Services (http://www.labor.state.id.us/) under the following reference numbers: #1040789 for G-5 and #1040988 for G-7. If you have any additional questions about the Avian Research Assistant Position please contact Sean Finn, USGS-BRD, Forest and Rangeland Ecosystem Science Center, sfinn@usgs.gov, phone: 208-426-2697 and for questions about the Plant Research Assistant Position contact Steve Hanser, USGS-BRD, Forest and Rangeland Ecosystem Science Center, shanser@usgs.gov, phone: 208-426-2892. Steve Hanser Wildlife Biologist Snake River Field Station USGS FRESC 970 Lusk St. Boise, ID 83706 208-426-2892 http://SAGEMAP.wr.usgs.gov ------------------------------ Date: Thu, 6 Feb 2003 15:34:10 -0500 From: Patrick Bohlen <pbohlen@ARCHBOLD-STATION.ORG> Subject: Research Internships--Archbold Biological Station Research internships in ecology are available at the MacArthur Agro-ecology Research Center (MAERC), a division of Archbold Biological Station, in south central Florida. MAERC is located at a 4,000-ha full-scale commercial cattle ranch that encompasses varied pastures and prairies, woodland hammocks, a small citrus grove and abundant wetlands. The Center is the site of large collaborative research projects with the University of Florida and South Florida Water Management District. Current research projects focus on nutrient cycling in subtropical pastures; the influence of grazing and fire on productivity and belowground processes in pastures and seasonal wetlands; wetland restoration; and the effects of beef cattle production on water quality. Research interns spend half time assisting with projects of the staff Research Biologist and half time conducting their own independent research project, and have the opportunity to interact with staff at Archbold Biological Station, a vibrant and dynamic center for ecological research and education. The internship is available for undergraduates and recent college graduates or graduate students. The length of appointment will be for 3-6 months (or longer for graduate students). Current positions will become available in March, 2003 or later. Interested applicants should contact Dr. Patrick Bohlen at (863) 699-0242 x22, or pbohlen@archbold-station.org, or apply by sending (1) a letter of application, including interests and period of availability, (2) a resume or curriculum vitae, included G.P.A. and relevant course work, and (3) contact information for at least two references, to Dr. Patrick Bohlen, MacArthur Agro-Ecology Research Center, 300 Buck Island Ranch Rd., Lake Placid, FL 33853. E-mail applications are welcome. More information about MAERC is available at: www.maerc.org. ------------------------------ Date: Thu, 6 Feb 2003 16:58:07 -0500 From: Randi Rotjan <randi.rotjan@TUFTS.EDU> Subject: Question about the Shannon Diversity Index Hello ecolog-ers, Is anyone familiar with the equation for the Shannon Diversity Index? I have found 4 sources for the equation, 1 of which specify the equation using the natural log (ln), 1 of which specifies the same thing, but differently, as log base e, 1 which says just "log", and one which uses log base 2. Which is the correct formula? Thanks! Randi __________________ Randi Rotjan Department of Biology Tufts University There is a single light of science, and to brighten it anywhere is to brighten it everywhere. --Isaac Asimov ------------------------------ Date: Thu, 6 Feb 2003 17:11:40 -0500 From: Howard V Cornell <cornell@UDEL.EDU> Subject: position Hello all, We have a temporary faculty position opening in the fall. The hire would be required to teach 2 sections of introductory biology and 1 section of general ecology in the fall, and 2 sections of ecology laboratory and 1 section of introductory biology in the spring. We expect this position to be converted to a permanent full-time non-tenure track position after next year. We have a small (Cornell, Karlson, Tallamy, McDonald) but active research group in ecology and evolution with whom the new hire could interact. Interested parties should send a letter of application, CV and have 3 letters of reference sent to Dr. David Usher, Department of Biological Sciences, University of Delaware, Newark, DE 19716. We will begin screening applicants soon, and all materials should be in our hands by March 1. ********************** Howard V. Cornell Department of Biological Sciences University of Delaware Newark, DE 19716 USA Phone: 302-831-2669 FAX: 302-831-2281 ********************** ------------------------------ Date: Thu, 6 Feb 2003 17:33:08 -0800 From: David Bryant <dmb@IO.HARVARD.EDU> Subject: Re: Questions re job search Being a job-hunting postdoc myself, I followed this thread closely. I am curious however about the statement quoted regarding funding. My institution (and others) do not allow postdocs to apply for funding as PI's. This is of course a requirement, as I understand it, for "taking it with you". So if universities do not hire postdocs without current funding how are we to obtain job offers?. Any personal experiences along these lines? David At 12:56 PM 2/6/03 -0800, Laurie Kellogg wrote: >Hello again, > >I suppose I should have been a lot more specific. The jobs that I (as w ll >as the other people who are interested in the answers to this questions) am >interested in are research university jobs with a greater emphasis on >research (75%) than on teaching (25%). Here is the statement from a web >site that began all of us discussing it: > >One year postdoctorals are useless, they must be 2-3 years to be product ve >Most research Universities will not hire you unless you are bringing in oney >You must have at least 5 primary publications to be competitive > >As this was just an opinion website, I wanted to know what others though >about this criteria. > >Thanks >Laurie David M. Bryant Dept of Earth and Planetary Sciences Harvard University 20 Oxford St. Cambridge, MA 02138 dmb@io.harvard.edu 617-496-6246 ------------------------------ Date: Thu, 6 Feb 2003 11:14:23 -0600 From: Dave McNeely <dlmcneely@LUNET.EDU> Subject: Re: Question about the Shannon Diversity Index Both Krebs (Ecological Methodology, Harper and Row, 1989) and Cox (General Ecology Laboratory Manual, eighth edition, McGraw Hill, 2002) have discussions of the Shannon-Wiener Diversity Index. Briefly, the index has been calculated using natural logs, base 2, and base 10, and values using each of these are in the literature. It is easy to convert one to the other (Cox gives the conversions if your calculator doesn't have them built in). Shannon used base 2, so did Wiener. Base 2 was used in information theory, probably for theoretical reasons in that field. Natural log and log base e are the same thing. Dave McNeely ----- Original Message ----- From: "Randi Rotjan" <randi.rotjan@TUFTS.EDU> To: <ECOLOG-L@LISTSERV.UMD.EDU> Sent: Thursday, February 06, 2003 3:58 PM Subject: Question about the Shannon Diversity Index > Hello ecolog-ers, > > Is anyone familiar with the equation for the Shannon Diversity Index? > > I have found 4 sources for the equation, 1 of which specify the equatio > using the natural log (ln), 1 of which specifies the same thing, but > differently, as log base e, 1 which says just "log", and one which uses log > base 2. > > Which is the correct formula? > > Thanks! > > Randi > > > __________________ > Randi Rotjan > Department of Biology > Tufts University > > There is a single light of science, and to brighten it anywhere is to > brighten it everywhere. > --Isaac Asimov ------------------------------ Date: Thu, 6 Feb 2003 17:53:49 -0500 From: Ben Bolker <bolker@ZOO.UFL.EDU> Subject: postdoc opening: quantitative/theoretical host-pathogen studies POSTDOCTORAL ASSOCIATE: QUANTITATIVE/THEORETICAL ECOLOGY of HOST-PATHOGEN SYSTEMS We are searching for one or more postdoctoral associates to take the lead in a variety of quantitative and theoretical ecology research. The associate will work in conjunction with Drs. Robert Holt and Ben Bolker at the University of Florida over a period of up to 3 years on NSF- and NIH-funded projects in spatial host-pathogen dynamics. Particular ongoing projects include (1) exploratory statistical and population-dynamic modeling of amphibian disease (chytrid fungi in Australian and American frogs and iridoviruses in North American salamanders), and (2) studies of within-host ecological and evolutionary dynamics of viral infection (related to empirical studies of HIV vaccine development). (Assignment to projects is flexible depending on skills and interests.) Applicants should bring some combination of quantitative (mathematical, statistical, and/or computational) expertise and interest, and should be capable of working creatively and independently. Salary will be commensurate with experience. Please send a statement of research interests, current CV, representative publications, and names of referees to: Dr. B. Bolker Department of Zoology, University of Florida PO Box 118525 Gainesville, FL 32611-8525. E-mail queries to Ben Bolker (bolker@zoo.ufl.edu) or Bob Holt (rdholt@zoo.ufl.edu). ------------------------------ Date: Thu, 6 Feb 2003 16:26:09 -0800 From: "Alexandre F. Souza" <alexfadigas@YAHOO.COM> Subject: Help on Randomization Methods Dear friends, I have data on survival of plants grouped by size classes (% survival per size class) in many co-specific plant populations of a given palm species, and would like to perform multiple regression analyses to seek for the role of a number of environmental variables like light, neighbourhood density, soil water status, etc. on the % survival of each size class. This will result in one analysis for each size class. However, many of these classes have few individuals, so the % I get from them are distorted. A friend have suggested that I should employ randomization methods for avoiding discarding many classes due to insufficient sample size. However, I do not figure it out how to do that. Should I bootstrap the individuals in a given size class with few individuals and obtain the % survival in each run? If so, the next step would be to obtain an average % survival for all bootstraps, which would be a better estimate of survival? Thanks for ideas and suggestions, Cheers, ===== Alexandre F. Souza Programa de Pѓs-Graduaчуo em Ecologia Departamento de Botтnica/IB Universidade Estadual de Campinas Campinas, SP Brasil __________________________________________________ Do you Yahoo!? Yahoo! Mail Plus - Powerful. Affordable. Sign up now. http://mailplus.yahoo.com ------------------------------ End of ECOLOG-L Digest - 5 Feb 2003 to 6 Feb 2003 (#2003-37) ************************************************************ џџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџџ
Thanks to discussion with TVR, I have decided to put a link to back files of the discussion group. This months back files.
The link to complete archives is available elsewhere.
This text was originally an e-mail. It was converted using a program
RUPANTAR- a simple e-mail-to-html converter.
(c)Kolatkar Milind. kmilind@ces.iisc.ernet.in